Publications

Published in Journals:

39. G Shapiro, D Surian, AG Dunn, R Perry, M Kelaher (In Press) Comparing human papillomavirus vaccine concerns on Twitter: A cross-sectional study of users in Australia, Canada, and the United Kingdom, BMJ Open [To appear]

38. R Bashir, FT Bourgeois, AG Dunn (2017) A systematic review of the processes used to link clinical trial registrations to their published resultsSystematic Reviews, 6:123. [doi: 10.1186/s13643-017-0518-3; altmetric]

37. S Raichand, AG Dunn, M-S Ong, FT Bourgeois, E Coiera, KD Mandl (2017) Conclusions in systematic reviews of mammography for breast cancer screening and associations with review design and author characteristicsSystematic Reviews, 6:105[doi: 10.1186/s13643-017-0495-6; altmetric]

36. AG Dunn, D Surian, J Leask, A Dey, KD Mandl, E Coiera (2017) Mapping information exposure on social media to explain differences in HPV vaccine coverage in the United StatesVaccine, 35(23):3033-3040. [doi: 10.1016/j.vaccine.2017.04.060; altmetric]

35. R Bashir, AG Dunn (2016) A systematic review protocol assessing the processes for linking clinical trial registries and their published resultsBMJ Open, 6(10):e013048 [doi: 10.1136/bmjopen-2016-013048; altmetric]

34. D Surian, DQ Nguyen, G Kennedy, M Johnson, E Coiera, AG Dunn (2016) Characterizing Twitter discussions about HPV vaccines using topic modelling and community detectionJournal of Medical Internet Research, 18(8):e232. [doi: 10.2196/jmir.6045; altmetric]

33. AG Dunn, X Zhou, J Hudgins, D Arachi, KD Mandl, E Coiera, FT Bourgeois. (2016) Financial competing interests were associated with favourable conclusions and greater author productivity in non-systematic reviews of neuraminidase inhibitorsJournal of Clinical Epidemiology, 80:43-49. [doi: 10.1016/j.jclinepi.2016.07.010; altmetric]

32. AG Dunn (2016) Set up a public registry of competing interestsNature, 533:9. [doi:10.1038/533009a; altmetric]

31. AG Dunn, E Coiera, KD Mandl, FT Bourgeois (2016) Conflict of interest disclosure in biomedical research: A review of current practices, biases, and the role of public registries in improving transparency. Research Integrity and Peer Review, 1:1. [doi:10.1186/s41073-016-0006-7 ; altmetric]

30. AG Dunn, J Leask, X Zhou, KD Mandl, E Coiera (2015) Associations between exposure and expression of negative opinions about human papillomavirus vaccines on social media: an observational studyJournal of Medical Internet Research, 17(6):e144. [doi:10.2196/jmir.4343 ; altmetric]

29. B Gallego, SR Walter, RO Day, AG Dunn, V Sivaraman, N Shah, CA Longhurst, E Coiera (2015) Bringing cohort studies to the bedside: Framework for a ‘green button’ to support clinical decision-makingJournal of Comparative Effectiveness Research, 4(3):191-197. [doi:10.2217/cer.15.12 ; altmetric]

28. X Zhou, Y Wang, G Tsafnat, E Coiera, FT Bourgeois, AG Dunn (2015) Citations alone were enough to predict favourable conclusions in reviews of neuraminidase inhibitors. Journal of Clinical Epidemiology, 68(1):87-93.
[doi:10.1016/j.jclinepi.2014.09.014 ; altmetric]

27. AG Dunn, D Arachi, J Hudgins, G Tsafnat, E Coiera, FT Bourgeois (2014) Financial Conflicts of Interest and Conclusions About Neuraminidase Inhibitors for Influenza: An Analysis of Systematic ReviewsAnnals of Internal Medicine; 161(7):513-518.
[doi:10.7326/M14-0933 ; altmetric] [post-print pdf]

26. AG Dunn, E Coiera (2014) Should comparative effectiveness research ignore industry-funded data? Journal of Comparative Effectiveness Research, 3(4):317–320. [doi: 10.2217/cer.14.31 ; altmetric]

25. AG Dunn, E Coiera, KD Mandl (2014) Is Biblioleaks Inevitable? Journal of Medical Internet Research, 16(4):e112.
[doi:10.2196/jmir.3331 ; altmetric]

24. G Tsafnat, P Glasziou, M-K Choong, AG Dunn, F Galgani, E Coiera (2014) Systematic review automation technologies, Systematic Reviews, 3:74. [doi: 10.1186/2046-4053-3-74 ; altmetric]

23. K Robinson, AG Dunn, G Tsafnat, P Glasziou  (2014) Citation networks of related trials are often disconnected: implications for bidirectional citation searches, Journal of Clinical Epidemiology, 67(7):793-799.
[doi:10.1016/j.jclinepi.2013.11.015 ; altmetric] [post-print pdf]

22. M-K Choong, F Galgani, AG Dunn, G Tsafnat (2014) Automatic evidence retrieval for systematic reviewsJournal of Medical Internet Research, 16(10):e223. [doi: 10.2196/jmir.3369 ; altmetric]

21. D Debono, JF Travaglia, AG Dunn, D Thoms, R Hinchcliff, J Plumb, J Milne, N Erez-Rein, J Wiley, J Braithwaite (2014) Strengthening the capacity of nursing leaders through multifaceted professional development initiativesCollegian, 23(1):19-28.
[doi:10.1016/j.colegn.2014.09.005]

20. J Majer, AG Dunn, J-P Orsini (2014) Computer Modelling as an Aid to Forest and Woodland RestorationOpen Journal of Forestry, 4(2) 112-123.
[doi:10.4236/ojf.2014.42017]

19. AG Dunn, KD Mandl, E Coiera, FT Bourgeois (2013) The effects of industry sponsorship on comparator selection in trial registrations for neuropsychiatric conditions in childrenPLOS ONE, 8(12): e84951.
[doi:10.1371/journal.pone.0084951 ; altmetric]

18. AG Dunn, FT Bourgeois, E Coiera (2013) Industry Influence in Evidence ProductionJournal of Epidemiology & Community Health, 67:537-538.
[doi:10.1136/jech-2013-202344 ; altmetric][pre-print pdf]

17. G Tsafnat, AG Dunn, P Glasziou, E Coiera (2013) The Automation of Systematic ReviewsBMJ, 346:f139.
[doi:10.1136/bmj.f139 ; altmetric]

16. B Gallego, AG Dunn, E Coiera (2013) The role of electronic medical records in comparative effectiveness researchJournal of Comparative Effectiveness Research, 2 (6):529-532.
[doi:10.2217/cer.13.65]

15. AYS Lau, AG Dunn, N Mortimer, A Gallagher, J Proudfoot, A Andrews, S-T Liaw, J Crimmins, A Arguel, E Coiera (2013) Social and Self-Reflective Use of a Web-based Personally Controlled Health Management SystemJournal of Medical Internet Research, 15(9):e211.
[doi:10.2196/jmir.2682 ; altmetric]

14. B Gallego, WB Runciman, O Perez-Concha, S-T Liaw, RO Day, AG Dunn, E Coiera (2013) The management of severe hypertension in Australia, BMC Health Services Research 13(414).
[doi:10.1186/1472-6963-13-414 ; altmetric]

13. AG Dunn, RO Day, KD Mandl, E Coiera (2012) Learning from Hackers: Open-Source Clinical TrialsScience Translational Medicine, 4:132cm5.
[doi:10.1126/scitranslmed.3003682 ; altmetric][post-print pdf]

12. AG Dunn, B Gallego, E Coiera (2012) Industry influenced evidence production in collaborative research communities: A network analysisJournal of Clinical Epidemiology, 65(5): 535-543.
[doi:10.1016/j.jclinepi.2011.10.010 ; altmetric][pre-print pdf]

11. AG Dunn, FT Bourgeois, S Murthy, KD Mandl, RO Day, E Coiera (2012) The role and impact of research agendas on the comparative effectiveness research amongst anti-hyperlipidemicsClinical Pharmacology & Therapeutics, 91(4): 685-691.
[doi:10.1038/clpt.2011.279 ; altmetric][pre-print pdf]

10. AG Dunn, J Braithwaite, B Gallego, RO Day, W Runciman, E Coiera (2012) Nation-scale adoption of new medicines by doctors: an application of the Bass diffusion modelBMC Health Services Research, 12:248.

9. B Gallego, M Westbrook, AG Dunn, J Braithwaite (2012) Investigating patient safety culture across a health system: multi-level modelling of differences associated with service types and staff demographicsInternational Journal for Quality in Health Care, 24(4): 311-320.

8. AD Spigelman, DS Debono, K Oates, AG Dunn, J Braithwaite (2012) Patient safety teaching in Australian medical schools: a national surveyClinical Risk, 18(2): 46-51.

7. F Magrabi, S Li, AG Dunn, E Coiera (2011) Challenges in measuring the impact of interruption on patient safety and workflow outcomesMethods of Information in Medicine, 50(5): 447-453.

6. AG Dunn, M-S Ong, JI Westbrook, F Magrabi, E Coiera, W Wobcke (2011) A simulation framework for mapping risks in clinical processes: the case of in-patient transfersJournal of the American Medical Informatics Association,18:259-266.
[post-print pdf]

5. AG Dunn, JI Westbrook (2011) Interpreting social network metrics in healthcare organisations: a review and guide to validating small networksSocial Science & Medicine, 72:1064-1068.
[post-print pdf]

4. AG Dunn, B Gallego (2010) Diffusion of competing innovations: the effects of network structure on the provision of healthcareJournal of Artificial Societies and Social Simulation October 2010, 13(4) 8.

3. AG Dunn (2010) Grid-induced biases in connectivity metric implementations that use regular gridsEcography 33:627-631.

2. AG Dunn, J Majer (2009) Measuring connectivity patterns in a macro-corridor on the south coast of Western Australia. Ecological Management & Restoration 10:51-57.

1. AG Dunn, J Majer (2007) In response to the continuum method for fauna research: a hierarchical, patch-based model of spatial landscape patternsOikos 116:1413-1418.

Published as Book Chapters:

6. AG Dunn, D Arachi, FT Bourgeois (2015) Identifying clinical study types from PubMed metadata: The active (machine) learning approachStudies in Health Technology and Informatics, 216:867-871. [From MedInfo 2015 conference doi: 10.3233/978-1-61499-564-7-867]

5. X Zhou, E Coiera, G Tsafnat, D Arachi, M-S Ong, AG Dunn (2015) Using social connection information to improve opinion mining: Identifying negative sentiment about HPV vaccines on TwitterStudies in Health Technology and Informatics, 216:761-765 [From MedInfo 2015 conference doi: 10.3233/978-1-61499-564-7-761]

4. AYS Lau, AG Dunn, N Mortimer, J Proudfoot, A Andrews, S-T Liaw, J Crimmins, A Arguel, E Coiera (2013) Consumers’ Online Social Network Topologies and Health BehavioursStudies in Health Technology and Informatics, 192:77-81. [From MedInfo 2013 conference]

3. WR Wobcke, AG Dunn (2012) Agent-based modelling for risk assessment of routine clinical processes. In N Desai, A Liu, M Winkoff (Eds) PRIMA 2010: Principles and Practice of Multi-Agent Systems. Springer-Verlag, Berlin.

2. F Magrabi F, SY Li, AG Dunn, E Coiera (2010) Why is it so difficult to measure the effects of interruptions in healthcare?Studies in Health Technology and Informatics, 160:784-788. [From MedInfo 2010 conference doi: 10.3233/978-1-60750-588-4-784]

1. AG Dunn (2010) Hierarchical cellular automata methods, in Understanding Complex Systems, Simulating Complex Systems by Cellular Automata. Eds. A.G. Hoekstra, P.M.A. Sloot, J. Kroc, Springer-Verlag Berlin, Pages 59-80.

Book Reviews: 

1. Book Review of: Batagelj V, Doreian P, Ferligoj A, Kejzar N, Understanding Large Temporal Networks and Spatial Networks: Exploration, Pattern Searching, Visualization and Network Evolution 2014, Wiley Series in Computational and Quantitative Social Science.

Presented at Conferences:

23. Q Grundy, AG Dunn, F Bourgeois, L Bero (To appear) The prevalence of conflict of interest disclosures in biomedical research. Peer Review Congress, September 10-12, Chicago, United States. [submission; selected; abstract]

22. R Bashir, AG Dunn (To appear) Do systematic review updates target questions where evidence accumulates faster? Evidence Live, June 21-22, 2017, London, United Kingdom. [submission; selected; abstract]

21. GK Shapiro, D Surian, AG Dunn, R Perry, M Kelaher (2017) Opposition to HPV vaccination on Twitter. Presented at the Canadian Association for Health Services and Policy Research Conference, May 24-26, 2017, Toronto, Canada. [submission; selected; abstract]

20. AG Dunn, FT Bourgeois (2016) A matching algorithm between ClinicalTrials.gov and PubMed to support the monitoring of gaps in published study results. AMIA Annual Symosium, November 2016 (Chicago, United States). [submission; selected; podium abstract]

19. X Zhou, E Coiera, G Tsafnat, D Arachi, M-S Ong, AG Dunn (2015) Using social connection information to improve opinion mining: Identifying negative sentiment about HPV vaccines on Twitter. The 15th World Congress on Medical and Health Informatics MedInfo, August 2015 (Sao Paulo, Brazil). [submission; selected; full paper]

18. AG Dunn, D Arachi, FT Bourgeois (2015) Identifying clinical study types from PubMed metadata: the active (machine) learning approach. The 15th World Congress on Medical and Health Informatics. MedInfo, August 2015 (Sao Paulo, Brazil). [submission; selected; full paper]

17. G Tsafnat, Paul Glasziou, AG Dunn, E Coiera (2014) The idea behind IDEA. The 2014 Macquarie University Workshop on Text Mining and Health, September 26 2014, Sydney, Australia. [submission; selected; abstract]

16. AG Dunn, G Tsafnat, E Coiera (2014) Automatic classification of published clinical articles using metadata instead of content, The 2014 Macquarie University Workshop on Text Mining and Health, September 26 2014, Sydney, Australia. [submission; selected; abstract]

15. AG Dunn, G Tsafnat, E Coiera (2013) Preventing harmful translations: an informatics approach to clinical evidence surveillance. NHMRC Research Translation Faculty Symposium. October 2013, Sydney, Australia. [submission; selected; abstract]

14. MB Gillies, F Galgani, G Tsafnat, AG Dunn, N Huang and M Williamson (2013) Feasibility of Using Australian GP Prescribing Data for Pharmacovigilance. 29th International Conference on Pharmacoepidemiology & Therapeutic Risk Management. August 2013, Montreal, Canada. [submission; selected]

13. F Galgani, AG Dunn, M Williamson, M Giles, G Tsafnat (2013) Understanding patient experiences from mining primary care data. Big Data in health and biomedicine. April 2013, Melbourne, Australia. [submission; selected]

12. AYS Lau, AG Dunn, N Mortimer, J Proudfoot, A Andrews, S-T Liaw, J Crimmins, A Arguel, E Coiera (2013)  Consumers’ Online Social Network Topologies and Health Behaviours, The 14th World Congress on Medical and Health Informatics. Medinfo 2013 (Copenhagen). [submission; selected; full paper]

11. AG Dunn, S Murthy, F Bourgeois, E Coiera (2011) A first look at a network of comparative effectiveness research in a large clinical trials registry, NetSci2011, June 6-10, Budapest. [submission; poster; abstract]

10. F Magrabi, SYW Li, AG Dunn, E Coiera (2010) Why is it so difficult to measure the effects of interruptions in healthcare? 13th International Congress on Medical Informatics. Medinfo 2010. [submission; selected; full paper]

9. AG Dunn, B Gallego (2010) Prescription volumes show that primary care is slow to respond to negative evidence, ACSQHC, 6-8 September, Perth. [submission; selected; abstract]

8. AG Dunn, B Gallego (2009) Explaining low levels of recommended care in healthcare provision via diffusion through advice-giving networks. Emergence in Geographical Space International Conference, 23-25 November 2009, Paris. [submission; selected; abstract]

7. AG Dunn (2009). Spatial and social clustering in cultural dynamics simulation: towards spatially-explicit, calibrated Axelrod models. Emergence in Geographical Space International Conference, 23-25 November 2009, Paris. [submission; selected; abstract]

6. AG Dunn (2008). Interdisciplinary technologies contribute to a new model of urbanisation for the south coast of Western Australia. Alcoa Research Centre for Stronger Communities Working Paper Series. ARCSC, Perth. [invited]

5. AG Dunn, D Stehlik (2007) Governance by social network: a multiscale analysis of communication efficiency. The 8th Asia-Pacific Complex Systems Conference, Surfers Paradise. Awarded best presentation in social sciences track. [submission; selected; abstract]

4. AG Dunn, J Majer (2007) Predictive, spatially explicit modelling of blackberry dispersal. 9th International Conference on the Ecology and Management of Alien Plant Invasions. Perth. [submission; selected; abstract]

3. AG Dunn, J Majer (2007) Simulating weed propagation via hierarchical, patch-based cellular automata. In Y. Shi et al. (Eds.) ICCS, Part I, LNCS 4487, 762-769. Beijing. [submission; selected; full paper]

2. AG Dunn, G Milne (2004) Modelling wildfire dynamics via interacting automata. In Sloot et al. (Eds.) ACRI04 LNCS 3305, 395-404, Amsterdam. [submission; selected; full paper]

1. AG Dunn (2003) Environment-independent performance analyses of cryptographic algorithms. The 26th Australasian Computer Science Conference, Adelaide. [submission; selected; full paper]

PhD Thesis:

1. AG Dunn (2007) A model of wildfire propagation using the interacting spatial automata formalism. The University of Western Australia [pdf on a new page]